PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G186800.1
Common NameB456_013G186800, LOC105784427
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 216aa    MW: 24459.6 Da    PI: 5.0263
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G186800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-1881130355
                 AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr ++ +g+++AeIrd    + k  r++lg+f+tae Aa a+++a++ ++g
  Gorai.013G186800.1  81 YRGVRKRP-WGKFAAEIRDsT--R-KGVRVWLGTFDTAEAAALAYDRAALTMRG 130
                         9*******.**********32..2.24*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.7E-3680144IPR001471AP2/ERF domain
PfamPF008471.2E-1380130IPR001471AP2/ERF domain
PROSITE profilePS5103223.32780138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-3180139IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2281140IPR016177DNA-binding domain
CDDcd000188.91E-2081138No hitNo description
PRINTSPR003678.4E-118192IPR001471AP2/ERF domain
PRINTSPR003678.4E-11104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDSSYFQYPY SQFSPESPSS HVSQENLSLE SLNQALPFNE NDSQEMLLLG VLNQAHENSF  60
ETNPRDDEVS SKANNEGEVS YRGVRKRPWG KFAAEIRDST RKGVRVWLGT FDTAEAAALA  120
YDRAALTMRG SMAILNFPME KVYQSLREMN YRFEEGCSPV LAMKKRHSLK SKRGIVKKVK  180
EEKGIISMEN LLVLEDLGAN YLEELLSMSE TPDLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2881139361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465764.11e-159PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC87e-72ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0D2W7C31e-159A0A0D2W7C3_G
STRINGPOPTR_0013s04240.14e-74(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-58ethylene response factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]