PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G186800.1

Common Name

B456_013G186800, LOC105784427

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 216aa MW: 24459.6 Da PI: 5.0263

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G186800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.5	3.4e-18	81	130	3	55
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + k r++lg+f+tae Aa a+++a++ ++g Gorai.013G186800.1 81 YRGVRKRP-WGKFAAEIRDsT--R-KGVRVWLGTFDTAEAAALAYDRAALTMRG 130 9*****.******32..2.24***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	3.7E-36	80	144	IPR001471	AP2/ERF domain
Pfam	PF00847	1.2E-13	80	130	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.327	80	138	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.0E-31	80	139	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.63E-22	81	140	IPR016177	DNA-binding domain
CDD	cd00018	8.91E-20	81	138	No hit	No description
PRINTS	PR00367	8.4E-11	81	92	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.4E-11	104	120	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MDSSYFQYPY SQFSPESPSS HVSQENLSLE SLNQALPFNE NDSQEMLLLG VLNQAHENSF 60 ETNPRDDEVS SKANNEGEVS YRGVRKRPWG KFAAEIRDST RKGVRVWLGT FDTAEAAALA 120 YDRAALTMRG SMAILNFPME KVYQSLREMN YRFEEGCSPV LAMKKRHSLK SKRGIVKKVK 180 EEKGIISMEN LLVLEDLGAN YLEELLSMSE TPDLW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	5e-28	81	139	3	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465764.1	1e-159	PREDICTED: ethylene-responsive transcription factor 1B-like
Swissprot	Q8LDC8	7e-72	ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBL	A0A0D2W7C3	1e-159	A0A0D2W7C3_G
STRING	POPTR_0013s04240.1	4e-74	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2275	28	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	1e-58	ethylene response factor 1

Link Out ? help Back to Top
Phytozome	Gorai.013G186800.1
Entrez Gene	105784427

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]